species:   Rhsol
pid:       PID0557
parent:    Rhi-milR-67
paralog:   
locus:     KB317727.1:55054-55139
matures:   ['GAGCUGUUUUCGUACUUGUGGACU', 'GUCUGUUUGGCGACGAUGGCCGG']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317727.1:55054-55139

0 out of bounds
34 alignments
34 proper strand
32 stranded perfect matches

       ***************************                **************************          
UAUCUUCUUCGAGCUGUUUUCGUACUUGUGGACUUCCCAAGUUAUUGGUAAUGUCUGUUUGGCGACGAUGGCCGGUGGCCCUUAUG
.....((.(((.((((((.((((......((((((.((((....)))).)).)))).....)))).))))))))).))........
----------GAGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=24 a=0 c
----------------------------------------------------GUCUGUUUGGCGACGAUGGCCGG----------- l=23 a=0 c*
---------CGAGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=25 a=20 ma
----------------------------------------------------GUCUGUUUGGCGACGAUGGCCGGU---------- l=24 a=0 ma*

-----------------------------------------------------------UGGCGACGAUGGCCGGUGGCCC----- l=22 a=1 
------------GCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=22 a=4 
-----------AGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=23 a=1 
---------CGcGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=25 a=1 
---------CGAGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=25 a=20 (ma)
---------CGAGCUGUcUUCGUACUUGUGGACU---------------------------------------------------- l=25 a=1 
--------UCGAGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=26 a=3 
--------UCGAGCUGUUUUCGUACUUGUGGACUUC-------------------------------------------------- l=28 a=1 
------CUUCGAGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=28 a=1 
----UUCUUCGAGCUGUUUUCGUACUUGUGGA------------------------------------------------------ l=28 a=1 

mb-01111
ax-1001001
ku-01
ss-101011101110
fn-111
